Homozygosity and Heterozygosity

The homozygosity and heterozygosity are defined as the proportion of homozygous and heterozygous of an individual, it can be easily obtained from HIBLUP by using the flag --homo and --hete, respectively.

Homozygosity

./hiblup --bfile demo --homo --out demo

A file named demo.homo will be generated as following:

id         a1a1      a2a2
IND0701  0.42255   0.201235
IND0702  0.415291  0.204923
IND0703  0.426455  0.199282

Heterozygosity

./hiblup --bfile demo --hete --out demo

A file named demo.hete will be generated as following:

id       a1a2
IND0701  0.376216
IND0702  0.379786
IND0703  0.374263