SNPs effect file

SNPs effect file is used for genomic mating, at least 5 columns are required, an example is as following:

SNPid  a1  a2  freq     add       dom
SNP1   A   C   0.1243  0.30134   0.00000
SNP2   G   T   0.0345  -0.06324  0.00124
SNP3   A   G   0.3635  0.15425   -0.00913

The file should be assigned to flag --score.


As mentioned above, the provided type of SNP effect should be consistent with the flag --add and --dom, and the column of additive SNP effect should be at the front of dominant SNP effect if both of them are provided.