- Multi-thread computing
- Allele frequency and Genotype frequency
- Homozygosity and Heterozygosity
- Construct relationship matrix (XRM)
- Format conversion of XRM
- Calculate inbreeding and relationship coefficient
- Principal component analysis (PCA)
- LM, BLUP, PBLUP, GBLUP(rrBLUP), SSGBLUP
- Fitting interaction for effects
- Single trait model
- Repeat records of single trait model
- Multiple traits model
- Solve mixed model equation (MME)
- Statistical tests of significance for effects
- Reliability and PEV
- Compute SNP effect
- Genomic mating
- LD
- Summary level BLUP (SBLUP)